Hi Shamsher, The best way to go would be to use the table browser. To get to the table browser click on the "Tables" from the blue navigation bar. To get the TSS based on UCSC Genes set the following:
clade: Mammal genome: Human assembly: hg19 group: Genes and Gene Prediction track: UCSC Genes table: knownGene region: genome identifiers (names/accessions): (paste or upload list) output format: selected fields from primary and related tables Click "get output" Check the fields that you want to be displayed (here are some that I would select) name Name of gene chrom Reference sequence chromosome or scaffold strand + or - for strand txStart Transcription start position Click "get output" This should display all the genes that you pasted in along with their transcription start sites. Also, you might want to take a look at the following TSS tracks under the "Expression and Regulation" subsection of the browser track controls: 1. SwitchGear TSS (hg18 & hg19 assemblies) 2. Eponine TSS (hg19 assembly) Hope this helps you! If you have further questions, please contact the mailing list: [email protected]. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ----- Original Message ----- From: "shamsher jagat" <[email protected]> To: [email protected] Sent: Thursday, June 2, 2011 10:39:04 AM Subject: [Genome] Downloading TSS for list of genes I want to have list of TSS for number of human genes (1000) what should be teh best way to go. Thanks. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
