Hi Ying, I'm sorry, but I was not able to reproduce your error. Is it possible that the file was somehow corrupted during the download? Have you tried to re-download the file?
If you are downloading an entire table, especially a large table such as snp132, we highly recommend using our downloads server. Once you download the file, you can separate the snp records into different files based on chromosome. To get to our downloads server, start at our homepage (http://genome.ucsc.edu/) and click on "Downloads" in our blue side bar. >From there, click on "Human" and scroll down to the section on hg19. Click on the "Annotation Database" link and then click on "snp132.txt.gz" link to download that file. The resulting link should be: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/snp132.txt.gz. I hope this information is helpful. Please feel free to contact the mail list again if you require further assistance. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 6/7/11 2:32 PM, Sun, Ying [BSD] - HGD wrote: > To whom it may concern, > > I am downloading dbsnp132 for all chromosomes at > http://genome.ucsc.edu/cgi-bin/hgTables?hgsid=197503545&clade=mammal&org=Human&db=hg19&hgta_group=varRep&hgta_track=snp132&hgta_table=0&hgta_regionType=range&position=chr14&hgta_outputType=primaryTable&hgta_outFileName=snp132_chr14, > and everything works fine except chromosome 14. When I tried to gunzip it > on Linux server, it always get error message "gunzip: snp132_chr14.gz: > unexpected end of file". Please help to figure it out. Thanks a lot. > > Sincerely, > Ying Sun > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
