It works perfectly now. Thanks. Best, Ying ________________________________
From: Mary Goldman [mailto:[email protected]] Sent: Tue 6/7/2011 5:25 PM To: Sun, Ying [BSD] - HGD Cc: [email protected] Subject: Re: [Genome] snp132 chr14 download problem Hi Ying, I'm sorry, but I was not able to reproduce your error. Is it possible that the file was somehow corrupted during the download? Have you tried to re-download the file? If you are downloading an entire table, especially a large table such as snp132, we highly recommend using our downloads server. Once you download the file, you can separate the snp records into different files based on chromosome. To get to our downloads server, start at our homepage (http://genome.ucsc.edu/) and click on "Downloads" in our blue side bar. >From there, click on "Human" and scroll down to the section on hg19. Click on the "Annotation Database" link and then click on "snp132.txt.gz" link to download that file. The resulting link should be: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/snp132.txt.gz. I hope this information is helpful. Please feel free to contact the mail list again if you require further assistance. Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 6/7/11 2:32 PM, Sun, Ying [BSD] - HGD wrote: > To whom it may concern, > > I am downloading dbsnp132 for all chromosomes at > http://genome.ucsc.edu/cgi-bin/hgTables?hgsid=197503545&clade=mammal&org=Human&db=hg19&hgta_group=varRep&hgta_track=snp132&hgta_table=0&hgta_regionType=range&position=chr14&hgta_outputType=primaryTable&hgta_outFileName=snp132_chr14, > and everything works fine except chromosome 14. When I tried to gunzip it > on Linux server, it always get error message "gunzip: snp132_chr14.gz: > unexpected end of file". Please help to figure it out. Thanks a lot. > > Sincerely, > Ying Sun > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome This email is intended only for the use of the individual or entity to which it is addressed and may contain information that is privileged and confidential. If the reader of this email message is not the intended recipient, you are hereby notified that any dissemination, distribution, or copying of this communication is prohibited. If you have received this email in error, please notify the sender and destroy/delete all copies of the transmittal. Thank you. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
