Hi Kathleen, You will first need to retrieve UCSC IDs from the hg19.knownToGnfAtlas2 table, then use hg19.kgXref to retrieve the corresponding gene names. I suggest you do this using the Table Browser. Make the following selections:
table: knownToGnfAtlas2 output format: selected fields from primary and related tables Click 'get ouput'. On the following page, select the 'name' and 'value' fields, scroll down and select 'hg19 kgXref' and click 'Allow Selection From Checked Tables'. From here, you can select 'geneSymbol' then click 'get output'. I hope this helps. Please contact us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group kathleen askland wrote: > Hello, > I have an additional question pertaining to the GNF Atlas 2 expression > data available through UCSC. > If I download the hgFixed.gnfHumanAtlas2All table, and join the > hg19.kgXref.geneSymbol field from the hg19.kgXref table, will the > matching of probe to gene symbol be correct even though the two tables > are from different databases? > Thank you, > Kathleen > > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
