Hello Carl, We need a bit more information to try and understand the problem you are seeing. How many custom tracks are you trying to load at once (10? 100? 1000? more?)and what type of track are they (wig, bigWig, bam, etc?). Also, are you using our public site (genome.ucsc.edu) or are you using a mirror of our site?
Best regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu On 06/08/11 13:44, Mcintosh, Carl (NIH/NCI) [E] wrote: > Thank you for your assistance. I have two items. > > Item 1 > I get the following error when attempting to load to may custom tracks: > Too many open sqlConnections for cache > > So I've attempted to break down the tracks into a few groups and load them. > This requires the deletion of the tracks via "manage custom track" to upload > the next batch. Is there an automated way of removing all tracks through > embedding it in the url or the track (format bedDetail) file? I couldn't find > documentation. I want to make it easy for my collaborator. > > Item 2 > When submitting a track to be uploaded via a url such as below > http://genome.ucsc.edu/cgi-bin/hgTracks?clade=mammal&org=Mouse&db=mm9&position=chr6%3A128%2C515%2C955130%2C500%2C000&pix=1200&hgt.customText=http://myserver.nih.gov/TrackA.txt"; > > if I set hgt.customText to: > http://myserver.nih.gov/TrackA.txt > I get an error that the says it cannot find the server. This is because of > the firewalls that are in place at NIH I presume, so > > if I set hgt.customText to: > file://myserver.nih.gov/TrackA.txt<file:///myserver.nih.gov/TrackA.txt> > I get a message that says the 1st line in the track file has a formatting > problem and that the chrom is case sensitive. Perhaps also a firewall issue > because: > > I am able to get it to work if I place it on a computer not contained in a > firewall. Is there a work around? > > Again, thank you very much. > > Carl > > > **************************** > Mr. Carl McIntosh > NCI-Frederick > Bldg. 560, Rm 21-23 > Frederick, MD 21702 > Tel: 301-846-5439 > [email protected]<mailto:[email protected]> > **************************** > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
