Hello Adriana, > Is there a way to highlight the regions where the RNA-seq is located > within the gene?
Unfortunately, no, there is not a way to draw anything on the gene track based on the contents of other tracks. > From what I can see here - it seems to me that they correspond to the exon regions? Is that correct? Yes. This is expected of RNA-seq of mRNA. > And why do I have different regions for the histone signals? Those are histone modifications -- usually a sign of chromatin being opened up for transcription. I hope this is helpful. You can get much more information on any of our tracks by clicking on the thin, gray button to the left of the track or by clicking on the track name. -- Brooke Rhead UCSC Genome Bioinformatics Group On 06/20/11 14:29, Brooke Rhead wrote: > Hi Adriana, > > My colleagues pointed out that the "I" at the end of the link below is > not supposed to be there. I am looking at your question now. > > -- > Brooke Rhead > UCSC Genome Bioinformatics Group > > On 06/20/11 14:07, Brooke Rhead wrote: >> Hi Adriana, >> >> I'm getting a "Not Found" error from >> http://people.binf.ku.dk/~xiaobei/Teaching/ngs_hg19.txtI, so I'm not >> sure what you are asking. >> >> Perhaps you could either restore the file and I'll take another look, or >> you could further describe what you are trying to do? >> >> Please reply to [email protected]. >> >> -- >> Brooke Rhead >> UCSC Genome Bioinformatics Group >> >> >> On 06/18/11 15:03, Pitea Adriana wrote: >>> Hi all,I am trying to investigate the following >> gene:http://genome.ucsc.edu/cgi-bin/hgTracks?hgS_doLoadUrl=submit&hgS_loadUrlName=http://people.binf.ku.dk/~xiaobei/Teaching/ngs_hg19.txtI >> would like to make an analysis. Is there a way to highlight the regions >> where the RNA-seq is located within the gene? From what I can see here - >> it seems to me that they correspond to the exon regions? Is that >> correct? And why do I have different regions for the histone signals? >>> Thank you,Best,Adriana >>> _______________________________________________ >>> Genome maillist - [email protected] >>> https://lists.soe.ucsc.edu/mailman/listinfo/genome >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
