Hi, I'm fairly new to the Chain and Net tools so I apologize if this is an obvious question.
What I am trying to do is to compare the genomes of human and chimpanzee and identify the mediate-sized (up to several kb) human insertion regions (ie, the regions only in human genome that are in between two adjacent alignments between human and chimpanzee). From what I read about the tools such as LASTZ, Chain, Net etc, I think I should utilize the chain and net tools to accomplish the task but I'm not certain how should I go about doing it. If anybody could kindly offer any input regarding this, it'll be greatly appreciated. Thank you in advance. - Jia _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
