Hi I have two primers that I used as input for in silico PCR. The search ended giving me several PCR products (listed below). As I am not familiar with human genome sequences, I was just wondering if the multiple results meant that my primers will anneal to multiple sites on human genome or these multiple results are actually the same sites but with different names.
>chr6_ssto_hap7:2657722-2658074<http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=200335593&db=hg19&position=chr6_ssto_hap7:2657722-2658074&hgPcrResult=pack> > 353bp CCCGGTTTCATTTTCAGTTG CCTTCCCGTTCTCCAGGTAT CCCGGTTTCATTTTCAGTTGaggccaaaatccccgcgggttggtcggggc ggggcggggctcgggggacggggctgaccgcggggccggggccagggtct cacatcatccagaggatgtacggctgcgacgtggggccggacgggcgcct cctccgcgggtatgaccaggacgcctacgacggcaaggattacatcgccc tgaacgaggacctgagctcctggaccgcggcggacaccgcggctcagatc acccagcgcaagtgggaggcggcccgtgtggcggagcaggacagagccta cctggagggcctgtgcgtggagtcgctccgcagATACCTGGAGAACGGGA AGG >chr6_mcf_hap5:2703754-2704106<http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=200335593&db=hg19&position=chr6_mcf_hap5:2703754-2704106&hgPcrResult=pack> > 353bp CCCGGTTTCATTTTCAGTTG CCTTCCCGTTCTCCAGGTAT CCCGGTTTCATTTTCAGTTGaggccaaaatccccgcgggttggtcggggc ggggcggggctcgggggacggggctgaccgcggggcctgggccagggtct cacaccctccagaggatgtacggctgcgacgtggggccggacgggcgcct cctccgcgggcatgaccagtccgcctacgacggcaaggattacatcgccc tgaacgaggacctgagctcctggaccgcggcggacacggcggctcagatc acccagcgcaagtgggaggcggcccgtgaggcggagcagtggagagccta cctggagggcctgtgcgtggagtggctccgcagATACCTGGAGAACGGGA AGG >chr6_mann_hap4:2670418-2670770<http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=200335593&db=hg19&position=chr6_mann_hap4:2670418-2670770&hgPcrResult=pack> > 353bp CCCGGTTTCATTTTCAGTTG CCTTCCCGTTCTCCAGGTAT CCCGGTTTCATTTTCAGTTGaggccaaaatccccgcgggttggtcggggc ggggcggggctcgggggacggggctgaccgcggggccggggccagggtct cacatcatccagaggatgtacggctgcgacgtggggccggacgggcgcct cctccgcgggtatgaccaggacgcctacgacggcaaggattacatcgccc tgaacgaggacctgagctcctggaccgcggcggacaccgcggctcagatc acccagcgcaagtgggaggcggcccgtgtggcggagcagctgagagccta cctggagggcctgtgcgtggagtcgctccgcagATACCTGGAGAACGGGA AGG >chr6:31323962-31324314<http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=200335593&db=hg19&position=chr6:31323962-31324314&hgPcrResult=pack> > 353bp CCCGGTTTCATTTTCAGTTG CCTTCCCGTTCTCCAGGTAT CCCGGTTTCATTTTCAGTTGaggccaaaatccccgcgggttggtcggggc ggggcggggctcgggggactgggctgaccgcggggccggggccagggtct cacaccctccagagcatgtacggctgcgacgtggggccggacgggcgcct cctccgcgggcatgaccagtacgcctacgacggcaaggattacatcgccc tgaacgaggacctgcgctcctggaccgccgcggacacggcggctcagatc acccagcgcaagtgggaggcggcccgtgaggcggagcagcggagagccta cctggagggcgagtgcgtggagtggctccgcagATACCTGGAGAACGGGA AGG >chr6_cox_hap2:2836649-2837002<http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=200335593&db=hg19&position=chr6_cox_hap2:2836649-2837002&hgPcrResult=pack> > 354bp CCCGGTTTCATTTTCAGTTG CCTTCCCGTTCTCCAGGTAT CCCGGTTTCATTTTCAGTTGaggccaaaatccccgcgggttggtcggggc ggggcggggctcggggggacggggctgaccgcggggccggggccagggtc tcacaccctccagagcatgtacggctgcgacgtggggccggacgggcgcc tcctccgcgggcataaccagtacgcctacgacggcaaggattacatcgcc ctgaacgaggacctgcgctcctggaccgcggcggacaccgcggctcagat cacccagcgcaagtgggaggcggcccgtgtggcggagcaggacagagcct acctggagggcacgtgcgtggagtggctccgcagATACCTGGAGAACGGG AAGG Thanks. Ying Ying Li, PhD Senior Scientist BioHelix Corporation 500 Cummings Ctr Suite 5550 Beverly MA 01915 Tel: 866-800-5458 Fax: 978-927-3382 www.biohelix.com _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
