Hi Katie, We do have a track called GRC Patch Release (http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&c=chr21&g=altSeqComposite) that does contain patches if that interests you.
Feel free to contact the mailing list ([email protected]) if you have further questions. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group On Thu, Jun 30, 2011 at 1:00 PM, Vanessa Kirkup Swing <[email protected]> wrote: > Hi Katie, > > The GRCh37 assembly on our site is the same GRCh37 as NCBI. From our > assembly gateway page (http://genome.ucsc.edu/cgi-bin/hgGateway) we > link to this page on NCBI: > http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/data/?build=37 > which is the version we used on our site. > > NCBI has been patching the data since it was originally released which > is why you are seeing differences between our data and the GRCh37 p2 > version. > > Here is the information on the patches: > http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/index.shtml# > > On our site, there is no way to compare our data with the patched versions. > > I hope that this helps clarify things for you. > > Vanessa Kirkup Swing > UCSC Genome Bioinformatics Group > > > > ---------- Forwarded message ---------- > From: Katie Doan <[email protected]> > Date: Thu, Jun 30, 2011 at 11:27 AM > Subject: [Genome] UCSC and NCBI assembly > To: [email protected] > Cc: Angelica Omaiye <[email protected]> > > > Hi, > > > > I am Katie Doan, currently working for Sound Choice Pharmaceutical company. > I have some questions related to assemblies and coordinates between UCSC and > NCBI. > > I realized that NCBI is using GRCh37 p2 and UCSC is GRCh37/hg19. Are these > two assemblies the same? > > However, the coordinates of a gene between UCSC and NCBI are different. Is > there a way to convert coordinates between NCBI to UCSC and vice versa? > > > > Thanks, > > Doan > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
