Hello, The data you are looking for can be found on our preview browser. Note that tracks on the preview browser have not undergone thorough testing yet and may change:
http://genome-preview.cse.ucsc.edu/ You can download the data for that track by using the table browser which you can get to by clicking on "Tables" in the blue navigation bar. http://genome-preview.cse.ucsc.edu/cgi-bin/hgTables?db=melGal1 After selecting your assembly of interest select: group: Genes and Gene Prediction Tracks track: Ensembl Genes table: ensGene region: genome output format: all fields from selected table file type returned: select gzip if you want this data as a compressed file and click on "get output". Best regards, Pauline Fujita, UCSC Genome Bioinformatics Group http://genome.ucsc.edu On 08/03/11 05:26, Luqman, Aslam wrote: > Dear Mr/Mrs, > I can find turkey (Meleagris gallopavo ) genome annotation file > from ensembl browser in gtf format but i need an annotation file in UCSC > format. I tried to find turkey genome annotation file in UCSC format from > UCSC browser which is not present there. I can find chicken genome annotation > file in UCSC format from the UCSC genome bioinformatics browser which you can > see from the following site. > ftp://hgdownload.cse.ucsc.edu/goldenPath/galGal3/database/ensGene.txt.gz > > I need a same kind of annotation file for the turkey genome. Can you please > tell me how can I find such a format file. If you have time can you please > make such a file for me or tell me the way how can I prepare UCSC format > annotation file for the turkey genome. > If it is not possible to provide the turkey genome annotation file in UCSC > format, could you then please provide me the description of each column > within the UCSC file format. I can't find the specific column information on > the UCSC website, and it might help me to properly transform the GTF file to > UCSC format > > I shall be really thankful for your help and guidance. > > Thanks in advance, > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
