I download it according to the link of this page: http://genome.ucsc.edu/goldenPath/help/bigWig.html
This page is about how to convert the bedgraph file into bigWig file. Then I download the bedGraphToBigWig program and put it in this folder. jingjing On Thu, Aug 4, 2011 at 4:58 PM, Hiram Clawson <[email protected]> wrote: > How did the file bedGraphToBigWig get into this directory ? > And what is it ? > > You may need some help with your shell commands: > > http://en.wikipedia.org/wiki/Unix_shell > http://linuxcommand.org/learning_the_shell.php > http://www.gnu.org/software/bash/manual/bashref.html > > --Hiram > > JINGJING JIN wrote: >> >> It seems the system can't find this command. >> However, the download bedGraphToBigWig is in this file. >> >> That is why I don't understand why it can't run? >> >> jingjing@ubuntu:/var/lib/gbrowse2/databases/arabidopsis$ $ file >> ./bedGraphToBigWig >> >> $: command not found >> jingjing@ubuntu:/var/lib/gbrowse2/databases/arabidopsis$ $ ldd >> ./bedGraphToBigWig >> >> $: command not found >> >> jingjing@ubuntu:/var/lib/gbrowse2/databases/arabidopsis$ ls >> all1.gff3 bedGraphToBigWig minus_all.txt >> all.gff3 bigWigToWig minus_bedgraph.bedGraph >> arabidopsis_all.fa chrom.sizes plus_all.txt >> arabidopsis_all.gff3 fetchChromSizes plus_bedgraph.bedGraph > -- Best Regards, JIN JINGJING School of Computing National University of Singapore Email: [email protected] [email protected] Phone: +65 83179646 _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
