There is no perl involved in any steps. If you have built the source tree, where are the commands you built ? They should be in $HOME/bin/$MACHTYPE/
You need to run the commands you built from the source tree, not the ones from our download directory. Yes, you can use the command after you build it. Building the libraries is only one step of building the commands in the source tree. Please follow the instructions in src/product/REAME.building.source Perhaps you can get some help in these procedures from someone local in your institution. JINGJING JIN wrote: > Thanks for your reply. > > Because I am not familiar with perl, there is any user manual for how > to use the source tree to convert my bedgraph file into bigWig file. > > I don't understand, I have build the source tree, why I should > continue build the source tree. > > After I build the source tree, can I use the bedGraphToBigWig command? > > I am so sorry to interrupt you. > > Thanks very much! > > jingjing > > > On Thu, Aug 4, 2011 at 5:18 PM, Hiram Clawson <[email protected]> wrote: >> Most likely your computer system is not compatible with the binary >> you download from our site. >> >> Please continue building the source tree. Now that you have the libraries >> built successfully, go to the directory of the command and build it on your >> system. Use the command you build on your system, not the one from >> our download directory. >> >> JINGJING JIN wrote: >>> I download it according to the link of this page: >>> >>> http://genome.ucsc.edu/goldenPath/help/bigWig.html >>> >>> This page is about how to convert the bedgraph file into bigWig file. >>> >>> Then I download the bedGraphToBigWig program and put it in this folder. >>> >>> jingjing >>> >>> On Thu, Aug 4, 2011 at 4:58 PM, Hiram Clawson <[email protected]> wrote: >>>> How did the file bedGraphToBigWig get into this directory ? >>>> And what is it ? >>>> >>>> You may need some help with your shell commands: >>>> >>>> http://en.wikipedia.org/wiki/Unix_shell >>>> http://linuxcommand.org/learning_the_shell.php >>>> http://www.gnu.org/software/bash/manual/bashref.html >>>> >>>> --Hiram > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
