Hi Arun, We have a tool called the Table Browser (http://genome.ucsc.edu/cgi-bin/hgTables?command=start) that you can use to download the data from the tracks that you are interested in. To get to the table browser click on "Tables" from the blue navigation bar.
There are help documents and tutorials to get you started. If you have questions after reading those, please contact the mailing list: [email protected]. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ---------- Forwarded message ---------- From: <[email protected]> Date: Thu, Aug 4, 2011 at 12:49 AM Subject: [Genome] ORF's for Human Genome 19 (HG19) To: [email protected] Dear all, I "Arun H Patil", an intern at the "Institute of Bioinformatics and Applied Biotechnology" (IBAB), Bangalore, India. I am working on genomic data & now I am interested in knowing to see if the mutations in the contigs are synonymous/non-synonymous for which I need ORF's (Reading frames) for human genome (HG19). From where and how can I obtain the ORF's of nucleotide sequence for which the protein is already known. For example, In UCSC genome browser for a gene, nucleotide sequences and its corresponding codons of all the exons are displayed (Attachment contains Screen shot of the above description). Is their any website where I can download this information? -or- Is their any method where I can obtain these results in a flat file? (For example: ftp://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/) Waiting to hear from you. Thanking you, With Regards, Arun H Patil _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
