Hi Alexander, If you suspect an assembly issue, we ask that you please report assembly issues to the Genome Reference Consortium, since we don't actually do the assembling ourselves: http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/index.shtml
However, a quick glance at known mm9 issues: http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/mouse/issues/ ...came up with this: http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/issue_detail.cgi?id=MG-23 So, it looks like this is a known issue. If you have any questions or concerns, I would contact them directly. - Greg Roe UCSC Genome Bioinformatics Group On 8/8/11 7:54 AM, Alex Dubeykovskiy wrote: > Hi Guys, > > I mentioned that your mouse genome assembling contains two copies of TFF1 > gene. One copy is located on chromosome 5, and it is not covered by known > BAC plasmid. This copy of TFF1 is in obvious contradiction with the available > information ( see for example knockout mouse phenotype). I believe that this > is an error of assembling. Can you check ( and if necessary correct) it? > > Thank you, > Alexander > > ________________________________ > This email and any files transmitted with it are confidential and intended > solely for the use of the individual or entity to > whom they are addressed. If you have received this email in error please > notify the sender. > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
