Thanks for the quick response,
since I was told that one cant add custom tracks to the Proteome
Browser, I was wondering if I
could set up my own proteome browser and create custom tracks like this?!
I am just looking for a browser which displays proteins and their
exons and there should be the option to add custom tracks which
represent if ether a exon is covered / homolog / identical after
blasting a protein from mouse against naked-mole-rat.

Basicly it should look like this:
I---------Exon 1----------I I---------------------Exon 2-------------------I

Covered:
I------------------------------------------------I
   I--------I

Any help is appreciated!
cheers,
Sven
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