Hi Sven, This is what one of our engineers had to say:
"PB (Proteome Browser) was designed to be tightly coupled with the Genome Browser and UCSC Known Genes. The user could set up his own mirror site and then try to modify PB code to work with his own data, but this will take tremendous time and technical expertise to do it, besides significant hardware investment. I would not recommend him to do so. If he works for a commercial company and they are willing to pay someone to get it done, then it might be possible, but will be costly." If you have further questions, please contact the mailing list. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ---------- Forwarded message ---------- From: sven berres <[email protected]> Date: Thu, Aug 11, 2011 at 1:18 AM Subject: [Genome] Proteome Browser custom tracks or alternative solution To: [email protected] Thanks for the quick response, since I was told that one cant add custom tracks to the Proteome Browser, I was wondering if I could set up my own proteome browser and create custom tracks like this?! I am just looking for a browser which displays proteins and their exons and there should be the option to add custom tracks which represent if ether a exon is covered / homolog / identical after blasting a protein from mouse against naked-mole-rat. Basicly it should look like this: I---------Exon 1----------I I---------------------Exon 2-------------------I Covered: I------------------------------------------------I I--------I Any help is appreciated! cheers, Sven _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
