Hi Varun,
You can retrieve this information from the Table Browser (from main
page, click on "Tables" on the top blue navigation bar). After selecting
a clade, genome, and assembly of your choice, set the following:
group: Genes and Gene Prediction Tracks
track: choose a gene prediction track you would like to use (I'll use
'UCSC Genes' for this example)
table: the default table will be the primary table for that track
('knownGene' in this case)
region: genome
identifiers: click on 'paste list', paste in your list of genes then
click 'submit'
output format: selected fields from primary and related tables
output file: enter a filename to save your results to a file, or leave
blank to display results in the browser
Click 'get output'. On the following page, select "cdsStart" and
"cdsEnd" then click 'get output'.
More information on how to use the Table Browser can be found here:
http://genome.ucsc.edu/cgi-bin/hgTables#Help
Please contact us again at [email protected] if you have any further
questions.
---
Luvina Guruvadoo
UCSC Genome Bioinformatics Group
On 8/12/2011 10:07 AM, varun gupta wrote:
> Hi Everyone
> I have a trivial question. it would be really kind if you could tell me its
> solution.
> I have a list of genes.
> I want to find the start and end coordinates of the CDS(CODING SEQUENCES)
> FOR THOSE genes.
> Can you please help me in this
>
> Regards
> Varun
> _______________________________________________
> Genome maillist - [email protected]
> https://lists.soe.ucsc.edu/mailman/listinfo/genome
>
_______________________________________________
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https://lists.soe.ucsc.edu/mailman/listinfo/genome
