Hi Daniel, Here are a few previously answered questions to help you get started: https://lists.soe.ucsc.edu/pipermail/genome/2011-May/025889.html https://lists.soe.ucsc.edu/pipermail/genome/2011-May/025877.html https://lists.soe.ucsc.edu/pipermail/genome/2010-December/024558.html
You may also find it useful to download the command-line version of the liftOver tool (http://hgdownload.cse.ucsc.edu/admin/exe/), and run 'liftOver' with no arguments to see the usage statement. Please feel free to search the Genome mailing list archives by visiting our home page and clicking on "Contact Us" (http://genome.ucsc.edu/contacts.html), or email us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 8/16/2011 4:55 AM, Daniel W. Tang wrote: > Hi, > > I am using liftOver results as part of my master thesis. As I need to > explain it in my defense, could you please tell me where I can find a > more detail introduction of the liftOver tool? I am wondering how did > you prepare the overchain files and what are the criteria you used? FYI, > I've used hg19 to pt3/pa2.gg1. Your help will be highly appreciated and > I am looking forward to your reply. > > Best regards, > Daniel W. Tang > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
