Dear Luvina, Thank you for your early and helpful reply.
I have an another question, are you planning to update hg19 human genome download dataset for reflecting the GRCh37 patch releases? http://hgdownload.cse.ucsc.edu/downloads.html#human Thank you for your help again. Best regards, Chisato Yamasaki ----- Original Message ----- From: "Luvina Guruvadoo" <[email protected]> To: "Chisato Yamasaki" <[email protected]> Cc: <[email protected]> Sent: Wednesday, August 17, 2011 8:40 AM Subject: Re: [Genome-mirror] Plan to update hg19 to GRCh37.2? > Hi Chisato, > > We are currently on the GRCh37 build, but we do have a track called GRC > Patch Release in which the most recent patches from NCBI are mapped to > GRCh37, if you are interested: > http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&c=chr21&g=altSeqComposite. > More information about these patches can be found here: > http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/index.shtml > > I hope this helps. Please contact us again at [email protected] if you > have any further questions. > > --- > Luvina Guruvadoo > UCSC Genome Bioinformatics Group > > > > On 8/16/2011 5:47 AM, Chisato Yamasaki wrote: >> Hello. >> I am interested in if you are planning to update hg19 to GRCh37.2, >> which was released from NCBI on Dec 14, 2010 (NCBI build 37.2). >> ========================================== >> Homo sapiens Genome: Statistics -- Build 37.2 >> >> Summary of the GenBank source sequences, the contigs, and the features >> annotated on the sequence based on genomic sequence information available >> on >> Dec 14, 2010. Also summarizes the objects on each non-sequence-based map >> in >> the MapViewer. >> >> http://www.ncbi.nlm.nih.gov/projects/mapview/stats/BuildStats.cgi?taxid=9606&build=37&ver=1 >> http://www.ncbi.nlm.nih.gov/projects/mapview/stats/BuildStats.cgi?taxid=9606&build=37&ver=2 >> ========================================== >> >> Thank you for your help in advance. >> >> Best regards, >> Chisato Yamasaki >> >> Integrated Database and Systems Biology Team >> Biomedicinal Information Research Center (BIRC) >> National Institute of Advanced Industrial Science and Technology (AIST) >> >> Waterfront Bio-IT Research Building, 2-4-7 Aomi, >> Koto-ku, Tokyo 135-0064, Japan. >> Tel: +81-3-3599-8800, Fax: +81-3-3599-8801 >> E-mail: [email protected] >> Skype: jbirc_cyamasak >> Linkedin: http://www.linkedin.com/in/chisatoyamasaki >> H-InvDB: http://www.h-invitational.jp >> ========================================== >> >> _______________________________________________ >> Genome-mirror mailing list >> [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome-mirror >> > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
