Hello Chisato, We do not have plans to update all the human tracks with respect to the patch releases. Note that the patch track mentioned by my colleague is also available in the downloads section here:
http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/ (see the altSeq* files) Best regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu On 8/16/11 8:22 PM, Chisato Yamasaki wrote: > Dear Luvina, > > Thank you for your early and helpful reply. > > I have an another question, are you planning to update hg19 human genome > download dataset for reflecting the GRCh37 patch releases? > http://hgdownload.cse.ucsc.edu/downloads.html#human > > Thank you for your help again. > > Best regards, > Chisato Yamasaki > > ----- Original Message ----- > From: "Luvina Guruvadoo" <[email protected]> > To: "Chisato Yamasaki" <[email protected]> > Cc: <[email protected]> > Sent: Wednesday, August 17, 2011 8:40 AM > Subject: Re: [Genome-mirror] Plan to update hg19 to GRCh37.2? > > > >> Hi Chisato, >> >> We are currently on the GRCh37 build, but we do have a track called GRC >> Patch Release in which the most recent patches from NCBI are mapped to >> GRCh37, if you are interested: >> http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&c=chr21&g=altSeqComposite. >> More information about these patches can be found here: >> http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/index.shtml >> >> I hope this helps. Please contact us again at [email protected] if you >> have any further questions. >> >> --- >> Luvina Guruvadoo >> UCSC Genome Bioinformatics Group >> >> >> >> On 8/16/2011 5:47 AM, Chisato Yamasaki wrote: >> >>> Hello. >>> I am interested in if you are planning to update hg19 to GRCh37.2, >>> which was released from NCBI on Dec 14, 2010 (NCBI build 37.2). >>> ========================================== >>> Homo sapiens Genome: Statistics -- Build 37.2 >>> >>> Summary of the GenBank source sequences, the contigs, and the features >>> annotated on the sequence based on genomic sequence information available >>> on >>> Dec 14, 2010. Also summarizes the objects on each non-sequence-based map >>> in >>> the MapViewer. >>> >>> http://www.ncbi.nlm.nih.gov/projects/mapview/stats/BuildStats.cgi?taxid=9606&build=37&ver=1 >>> http://www.ncbi.nlm.nih.gov/projects/mapview/stats/BuildStats.cgi?taxid=9606&build=37&ver=2 >>> ========================================== >>> >>> Thank you for your help in advance. >>> >>> Best regards, >>> Chisato Yamasaki >>> >>> Integrated Database and Systems Biology Team >>> Biomedicinal Information Research Center (BIRC) >>> National Institute of Advanced Industrial Science and Technology (AIST) >>> >>> Waterfront Bio-IT Research Building, 2-4-7 Aomi, >>> Koto-ku, Tokyo 135-0064, Japan. >>> Tel: +81-3-3599-8800, Fax: +81-3-3599-8801 >>> E-mail: [email protected] >>> Skype: jbirc_cyamasak >>> Linkedin: http://www.linkedin.com/in/chisatoyamasaki >>> H-InvDB: http://www.h-invitational.jp >>> ========================================== >>> >>> _______________________________________________ >>> Genome-mirror mailing list >>> [email protected] >>> https://lists.soe.ucsc.edu/mailman/listinfo/genome-mirror >>> >>> >> > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
