Hello, I could provide you access to the BED and bigBed file via ftp. I would send the ftp account data directly to the person who will be concerned with this (in order to prevent it from being publicly available).
I've obtained the program from hgdownload. 'uname -a' output: Linux cruncher 2.6.37-rc7-kic #1 SMP Wed Jan 19 18:11:15 CET 2011 x86_64 GNU/Linux Regards, Thomas -------- Original-Nachricht -------- > Datum: Tue, 23 Aug 2011 14:25:31 -0700 > Von: Luvina Guruvadoo <[email protected]> > An: Thomas Blank <[email protected]> > CC: [email protected] > Betreff: Re: [Genome] bigBedToBed executable - restrictions? > Hi Thomas, > > In order to further assist you, we will need to see the original data > and bigBed you created. In addition, where did you obtain the program, > from our hgdownload binaries or built locally in the source tree? What > is your environment (from the 'uname -a' command output)? Please reply > to [email protected]. > > Regards, > --- > Luvina Guruvadoo > UCSC Genome Bioinformatics Group > > > On 8/23/2011 11:16 AM, Thomas Blank wrote: > > Hello, > > > > I'm trying to make interval queries using the bigBedToBed executable. > When querying small intervals all works fine, but for big ones I get the > following error: > > Bad address > > Error reading -1715413998 bytes > > > > Are there restrictions on the number of items or the bigBed file size? > > In my case the number of items is 167,817,359 (all on the same > chromosome) and the bigBed file size is 2.5GB. > > > > Thanks, > > > > Thomas > > _______________________________________________ > > Genome maillist - [email protected] > > https://lists.soe.ucsc.edu/mailman/listinfo/genome > > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
