Hi, Thomas! Can you also please provide the command-line that is failing?
We would like to see what options you are using. -Galt On 08/24/11 07:45, Thomas Blank wrote: > Hello, > > I could provide you access to the BED and bigBed file via ftp. I would send > the ftp account data directly to the person who will be concerned with this > (in order to prevent it from being publicly available). > > I've obtained the program from hgdownload. > 'uname -a' output: Linux cruncher 2.6.37-rc7-kic #1 SMP Wed Jan 19 18:11:15 > CET 2011 x86_64 GNU/Linux > > Regards, > > Thomas > > > -------- Original-Nachricht -------- >> Datum: Tue, 23 Aug 2011 14:25:31 -0700 >> Von: Luvina Guruvadoo <[email protected]> >> An: Thomas Blank <[email protected]> >> CC: [email protected] >> Betreff: Re: [Genome] bigBedToBed executable - restrictions? > >> Hi Thomas, >> >> In order to further assist you, we will need to see the original data >> and bigBed you created. In addition, where did you obtain the program, >> from our hgdownload binaries or built locally in the source tree? What >> is your environment (from the 'uname -a' command output)? Please reply >> to [email protected]. >> >> Regards, >> --- >> Luvina Guruvadoo >> UCSC Genome Bioinformatics Group >> >> >> On 8/23/2011 11:16 AM, Thomas Blank wrote: >>> Hello, >>> >>> I'm trying to make interval queries using the bigBedToBed executable. >> When querying small intervals all works fine, but for big ones I get the >> following error: >>> Bad address >>> Error reading -1715413998 bytes >>> >>> Are there restrictions on the number of items or the bigBed file size? >>> In my case the number of items is 167,817,359 (all on the same >> chromosome) and the bigBed file size is 2.5GB. >>> Thanks, >>> >>> Thomas >>> _______________________________________________ >>> Genome maillist - [email protected] >>> https://lists.soe.ucsc.edu/mailman/listinfo/genome >>> > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
