Dear mailing list, I hope this is the right forum to ask my question: I have a large set of snp-markers, which are mapped to the UMD3.1 bovine genome assembly. My quest is to map these markers to genes. I have succeeded doing so with the ensemble genes, but these are mapped to the Btau4.0 genome assembly. The question is now, is there a large difference between the assemblies; that is, can I use the genes mapped to Btau4.0 assembly? If not, where can I find a table of genes (and their location) mapped to UMD3.1?
For reference, I have found the ftp-site for the UMD3.1, but all genes I can see are "Derived by automated computational analysis...". Thank you in advance, Stefan McKinnon Høj-Edwards Dept. of Genetics and Biotechnology PhD student Faculty of Agricultural Sciences [email protected] Aarhus University Tel.: +45 8999 1291 Blichers Allé 20, Postboks 50 Web: www.iysik.com DK-8830 Tjele Tel.: +45 8999 1900 Web: www.agrsci.au.dk _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
