Dear sir/madam, I have a question about the liftOver conversion tool. I'm trying to use the linux command line version of liftOver to convert my data from hg18 to hg19, seeing that my data is quite large. However, when the begin position is the same as the end position (insertions for example have the same start as end position) than the program says that this is "deleted in new". If I use the online version of liftOver, there's no problem and I get the position in the newer build. Am I doing something wrong? Is there a special command that I have to give to prevent this?
Thank you in advance. Kind regards, Linda Koster _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
