Hi George, One of our engineers has this to say:
The most meaningful measurement would be to intersect the set of genes with the "Conserved Elements" tracks in the "Conservation" composite. For example the table: phastConsElements46way This will give a log odds score for any conserved element in a gene. See also: https://lists.soe.ucsc.edu/pipermail/genome/2005-October/008744.html and https://lists.soe.ucsc.edu/pipermail/genome/2005-October/008748.html Please contact us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 9/13/2011 8:36 AM, Blanck, George wrote: > Is there a way to export, to an excel file, a single mammalian conservation > value for individual genes? > > > > For example, if I am viewing 30 genes over 2 million base pairs, is it > possible to export a single, average phastCon score (representing the exons > of each gene) for each of the 30 genes? > > > > Other approach? > > > > Thx, George > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
