Hello, I have two questions regarding the histone modification markers tracks (ENCODE Regulation Super-tracks). 1) How were the default ranges for the tracks set? i.e. why are the default ranges for H3K4Me1 from 0 to 50, and for H3K4Me3 from 0 to 150? Do these depend on the markers or the regions? I am trying to visualise the signal enrichment but I am not sure which ranges would be more appropriate in order to distinguish signal from noise. 2) I have downloaded the files wgEncodeBroadHistone (broadPeak files) from the ucsc downloads and I want to create a binary score for each region - signal enrichment/non enrichment. What are the "signalValue", "pValue", "qValue", of these files? Any help/references would be much appreciated!
Thanks, Emma _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
