Hi Yishay, The Batch Coordinate Conversion (liftOver) utility is a useful tool for converting coordinates between assemblies. Please see the following links for more information:
http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#Convert https://lists.soe.ucsc.edu/pipermail/genome/2011-March/025319.html Please contact us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 9/20/2011 12:46 AM, yishay pinto wrote: > hello, > I have human RNA editing database and I want to check which human editing > sites exists in mouse. > In order to do that I need to convert a genomic coordinate from human to > mouse, is there any tool that may help me to do that? > After finding the DNA coordinate I need to find this coordinate in mRNA. is > there any tips here? > And maybe the most importanat question- Is the best way to do that is by > downloading the database from your site or is there any inteface that I can > use which may make it easier. > thanks, > YIshay > > > 2011/9/8 Vanessa Kirkup Swing<[email protected]> > >> Hi Yishay, >> >> We suggest that you take a look at some of our training materials >> located here to get an overview of how to use the UCSC Genome Browser: >> >> http://genome.ucsc.edu/training.html >> >> If you have further questions after reviewing those materials, please >> contact the mailing list: [email protected]. >> >> >> Vanessa Kirkup Swing >> UCSC Genome Bioinformatics Group >> >> >> ---------- Forwarded message ---------- >> From: yishay pinto<[email protected]> >> Date: Thu, Sep 8, 2011 at 8:23 AM >> Subject: [Genome] genomic project >> To: [email protected] >> >> >> hello, >> I'm about to do a genomic project. >> I would like to consult about the strategy I should take in order to work >> with your databases properly. In addition i would be glad to know and if >> there any tools or interface that I better use. >> However am I in the right place to ask this questions? >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome >> > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
