Hi Tomas, Most of the Neandertal Assembly and Analysis tracks are available on hg19. The Modern Human Seq and Neandertal Contigs tracks are the only tracks from this group that are only available on hg18 and not on hg19. Most of the Neandertal tracks on hg19 were lifted over from hg18 and have a "18" icon next to their names; for more information on tracks we've lifted, see http://genome.ucsc.edu/goldenPath/help/hg18ToHg19LiftOver.html.
To access these tracks on hg19, from the main browser page (http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19), scroll down to the "Neandertal Assembly and Analysis" group. The Denisova Assembly and Analysis tracks are not available on hg19. Please contact the mail list ([email protected]) again if you have any further questions. Katrina Learned UCSC Genome Bioinformatics Group On 9/29/11 11:45 PM, Tomas Lovera wrote: > Dear, > > Can you please let me know whether the Neandertal and Denisova Assemblies and > Analysis tracks are also available as part of the February 2009 GRCh37/hg 19 > reference sequence? > > To access the Neandertal and Denisova Assemblies and Analysis tracks > information,please click in the follopwing links: > > 1.- UCSC Genome and Bioinformatics Home Page > 2.- Neandertal > 3.- Neandertal Alleles in Human/ChimpCoding Non-synonymous Differences in > Human Lineage: ........ > 4.- All Neandertal Assembly and Analysis Tracks > 5.- Configure Tracks on UCSC Genome Browser > 6.- Neandertal Assembly and Analysis > 7.- Denisova Assembly and Analysis > > Thanks, Tomas Lovera, > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
