dear Sir, I have a problem on the UCSC human genome data about self-chain. I download the data: hg18.hg18.net.gz, hg18.hg18.all.chain.gz, &chr#.hg18.hg18.net.axt.gz through http://hgdownload.cse.ucsc.edu/goldenPath/hg18/vsSelf/.
Then I found a position: chr2:50667684-50670457 in the UCSC Genome Browser. Its self alignment is itself. Then when I check it in the data downloaded, in hg18.hg18.all.chain.gz I just found a position chr2:192280692-192283466, which it said they are a couple of self-chain. But i was surprised to find that I put the position chr2:192280692-192283466 into UCSC Genome Browser, there was no self-chain displayed. Did I download wrong data sets, or maybe there is a updated one needed? I appreciate your reply soon. your sincerely -- Regards! Zhou Weichen MOE Key Laboratory of Contemporary Anthropology(Fudan University) School of Life-science at Fudan University 220# Handan Road, Shanghai(200433) P.R.China. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
