Hi, I would like to upload rnaseq.combined.gtf file generated from cufflinks to the browser. The file is on a ftp server. Here is the upload command I am using:
track name="chrY.gtf" description="chrY.gtf" bigDataUrl=http://helixweb.nih.gov/ftp/pub/nimmi/4cases_5controls_individualLanes_pe_hg19_cuffcompare_withoutUcscGTF_chrYonly_forbrowser.combined.gtf The format of the GTF file is given below: -------------------------------------------------------------------------------------------------------------------------- track name="chrY.gtf" description="chrY.gtf" chrY Cufflinks exon 2709637 2709668 . + . gene_id "XLOC_127504"; transcript_id "TCONS_01000817"; exon_number "1"; oId "CUFF.50723.1"; tss_id "TSS176374"; chrY Cufflinks exon 2710206 2710283 . + . gene_id "XLOC_127504"; transcript_id "TCONS_01000817"; exon_number "2"; oId "CUFF.50723.1"; tss_id "TSS176374"; chrY Cufflinks exon 2712118 2712298 . + . gene_id "XLOC_127504"; transcript_id "TCONS_01000817"; exon_number "3"; oId "CUFF.50723.1"; tss_id "TSS176374"; --------------------------------------------------------------------------------------------------------------------------- The command does not generate any errors but the track is not visible. Do I have to format the GTF file? Thank you very much. Regards, Nirmala _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
