Hi Mikhail, The Human ESTs track shows alignments between human ESTs in Genbank and the genome. For more details, please see the following track description page: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=est. There are two ways to download this data: via the Table Browser or directly from our downloads server. Using the Table Browser (http://genome.ucsc.edu/cgi-bin/hgTables), make the following selections:
clade: Mammal genome: Human assembly: hg19 group: mRNA and EST Tracks track: Human ESTs table: all_est (click 'describe table schema' to view a description of table columns & sample data) ouput format: all fields from selected table (or 'selected fields from primary and related tables') Click 'get output'. For more information on how to use the Table Browser, please refer to our help pages: http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html To access our downloads server from the main page, click on 'Downloads' (located on left-side navigation menu). On the following page, click on 'Human' then 'Annotation Database'. This will take you here: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/, where you can download all_est.txt.gz. I hope this information is useful and answers your question. Please contact us again at [email protected] if you have any additional questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 11/8/2011 11:59 AM, Mikle Skoblov wrote: > Hello Colleagues, > Please help me in one case. Several years ago I downloaded from NCBI > ftp-site file with data of mapping human EST on genome. Each row > contains about such record: the number of chromosome, the coordinate > beginning and end of the mapping fragment EST, accession number of > EST. Today, I couldn't find such file on NCBI ftp-site, and people > from "Customer Service in NCBI" told me that they haven't such > information. > Please, tell me, do you have such kind of data about mapping human EST > on genome which i can downloaded? Could you help to show me where it > is located? Thanks in advance. > > With best regards, > Mikhail Skoblov > senior staff scientist > Research Centre for Medical Genetics, > Russian Academy of Medical Sciences > Russian Federation, Moscow, > 115478, Moskvorechie 1, > Tel.8-10-(499)-612-80-45. > e-mail: [email protected] > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
