Hi Matko, The files that we have are only in bam format which contain the Denisova read sequences, and where they align to the reference assembly. Unfortunately, there isn't a whole-genome assembly for Denisova. Although they sequenced the Denisova genome to ~1.9-fold coverage ( http://www.nature.com/nature/journal/v468/n7327/abs/nature09710.html), their reads did not cover the complete genome.
The bam files for the Denisova tracks are linked from the track description pages for the track: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg18&c=chrX&g=bamSLDenisova http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg18&c=chrX&g=denisovaModernHumans If you have further questions, please contact the mailing list: [email protected]. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ---------- Forwarded message ---------- From: <[email protected]> Date: Tue, Nov 22, 2011 at 3:54 AM Subject: [Genome] denisova genome To: [email protected] Dear, Please could You tell me how to access the Denisova genome sequence (.fasta, or .fa format files) from the UCSC genome browser. Best wishes, Matko Gluncic Ph.d University of Zagreb Physics department Bijenicka cesta 32 10000 Zagreb Croatia _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
