Dear Colleagues, My collaborators and I have just submitted a manuscript to PLoS ONE, titled "Transcriptome-wide survey of mouse CNS-derived cells reveals monoallelic expression within novel gene families." It includes results of Illumina sequencing and cSNP analysis of 4 clonal neural stem cell lines. The cell lines are derived from F1 hybrid mice resulting from the cross of C57BL/6 X JF1 (Mus musculus molossinus JF1). The cell lines are described in a previous PLoS ONE article (Wang et al, 2007). We are in the process of uploading the JF1 cSNP library to dbSNP at NCBI.
The first author on the manuscript, Sierra M. Li, is generating a bed file that includes allele-specific expression at each cSNP analyzable in each of the 4 cell lines. We would like to upload this to the UCSC genome browser as a public custom track. The track should be generally useful, since it contains information on allele-specific expression of ~7000 genes. Please let us know how best to proceed. We would also appreciate it if you could let us know what the procedure is for confirmation of the process by UCSC, since we understand that PLoS ONE may request proof that the upload is in progress prior to acceptance of our manuscript. Thank you for your help. Sincerely, Judy Sam Judith Singer-Sam, Ph.D. Professor, Division of Biology Beckman Research Institute, City of Hope Duarte, CA 91010 Tel.: 626-301-8241 FAX: 626-930-5366 --------------------------------------------------------------------- *SECURITY/CONFIDENTIALITY WARNING: This message and any attachments are intended solely for the individual or entity to which they are addressed. This communication may contain information that is privileged, confidential, or exempt from disclosure under applicable law (e.g., personal health information, research data, financial information). Because this e-mail has been sent without encryption, individuals other than the intended recipient may be able to view the information, forward it to others or tamper with the information without the knowledge or consent of the sender. If you are not the intended recipient, or the employee or person responsible for delivering the message to the intended recipient, any dissemination, distribution or copying of the communication is strictly prohibited. If you received the communication in error, please notify the sender immediately by replying to this message and deleting the message and any accompanying files from your system. If, due to the security risks, you do not wi! sh to receive further communications via e-mail, please reply to this message and inform the sender that you do not wish to receive further e-mail from the sender. --------------------------------------------------------------------- _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
