Hello Judy, Your data sound interesting and we would be happy to include them on our Custom Track page here: http://genome.ucsc.edu/goldenPath/customTracks/custTracks.html
Here is the process for inclusion on that page: 1. Generate Custom Tracks using either the bigBed or bigWig data type following these guidelines (including the "track" lines, "description" lines, and data): http://genome.ucsc.edu/goldenPath/help/customTrack.html 2. Upload the Custom Tracks to a web accessible server at your institution. 3. Write a short paragraph describing your data. Include a link to your manuscript. 4. Send the paragraph and URL of the location of the Custom Tracks to me and I will post the whole thing on the Custom Tracks page. We do not provide engineering or quality assurance support for the tracks on the Custom Tracks page. Regards, ---------- Ann Zweig Technical Project Manager, UCSC Genome Browser http://genome.ucsc.edu On 11/22/11 2:38 PM, Sam, Judy wrote: > Dear Colleagues, > > My collaborators and I have just submitted a manuscript to PLoS ONE, titled > "Transcriptome-wide survey of mouse CNS-derived cells reveals monoallelic > expression within novel gene families." It includes results of Illumina > sequencing and cSNP analysis of 4 clonal neural stem cell lines. The cell > lines are derived from F1 hybrid mice resulting from the cross of C57BL/6 X > JF1 (Mus musculus molossinus JF1). The cell lines are described in a > previous PLoS ONE article (Wang et al, 2007). We are in the process of > uploading the JF1 cSNP library to dbSNP at NCBI. > > The first author on the manuscript, Sierra M. Li, is generating a bed file > that includes allele-specific expression at each cSNP analyzable in each of > the 4 cell lines. We would like to upload this to the UCSC genome browser as > a public custom track. The track should be generally useful, since it > contains information on allele-specific expression of ~7000 genes. > > Please let us know how best to proceed. We would also appreciate it if you > could let us know what the procedure is for confirmation of the process by > UCSC, since we understand that PLoS ONE may request proof that the upload is > in progress prior to acceptance of our manuscript. > > Thank you for your help. > > Sincerely, > > Judy Sam > > Judith Singer-Sam, Ph.D. > Professor, Division of Biology > Beckman Research Institute, City of Hope > Duarte, CA 91010 > > Tel.: 626-301-8241 > FAX: 626-930-5366 > > > > > --------------------------------------------------------------------- > *SECURITY/CONFIDENTIALITY WARNING: > This message and any attachments are intended solely for the individual or > entity to which they are addressed. This communication may contain > information that is privileged, confidential, or exempt from disclosure under > applicable law (e.g., personal health information, research data, financial > information). Because this e-mail has been sent without encryption, > individuals other than the intended recipient may be able to view the > information, forward it to others or tamper with the information without the > knowledge or consent of the sender. If you are not the intended recipient, or > the employee or person responsible for delivering the message to the intended > recipient, any dissemination, distribution or copying of the communication is > strictly prohibited. If you received the communication in error, please > notify the sender immediately by replying to this message and deleting the > message and any accompanying files from your system. If, due to the security > risks, you do not ! wi! > sh to receive further communications via e-mail, please reply to this > message and inform the sender that you do not wish to receive further e-mail > from the sender. > > --------------------------------------------------------------------- > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
