Sorry for this question but, where can I find the $HOME/.hg.conf file to set MySQL connection to the UCSC databases?
How should I use the Kent source tree to query bigWig files (particularly Orchid v1 and v2 tables) by position? Regards, Diego El 1 de diciembre de 2011 16:36, Diego Pereira <[email protected]>escribió: > The 'make utils' command worked Hiram. > > Thanks! > > Now let's see if I can make the souce code work for me... > > Cheers > > Diego > > El 1 de diciembre de 2011 16:24, Hiram Clawson <[email protected]>escribió: > > If you want to install the CGI binaries in an Apache server, find out where >> the html hierarchy for the Apache is and direct the build to place >> everything >> in that location. You can use the build scrips in src/product/scripts/ >> after you set the variables in browserEnvironment.txt >> View the README file there. >> >> However, you do not need the CGI binaries installed to build the command >> line utilities. Try a 'make utils' from the src/ directory. >> >> --Hiram >> >> Diego Pereira wrote: >> >>> Thank you Hiram. >>> >>> Yeah you're right, but I would like to finish this installation first >>> since >>> I'll probably try several different tools in the near future. >>> >>> So, by reading the Readme.builing.source file, and found a work-around >>> info >>> about the apache folder. >>> >>> mkdir /usr/local/apache >>> ln -s /var/www/cgi-bin-${LOGNAME} /usr/local/apache/cgi-bin >>> >>> It says the file exists and that the link was created. >>> >>> However, I'm still getting the same error as before. >>> >>> Many thanks again. >>> >>> Diego >>> >>> >>> El 1 de diciembre de 2011 14:32, Hiram Clawson <[email protected] >>> >escribió: >>> >>> Now that you have the libraries built, you can go to the directory of >>>> the specific command you want to build and construct just that command. >>>> You are attempting to construct the entire genome browser CGI binaries. >>>> I believe you just want a couple of the big* commands. Note the >>>> instructions in Step 3a of src/product/README.building.****source >>>> >>>> --Hiram >>>> >>>> Diego Pereira wrote: >>>> >>>> Thank you Hiram. >>>>> >>>>> Now I get this error: >>>>> >>>>> mv: cannot move `cartReset' to `/usr/local/apache/cgi-bin-** >>>>> >>>>> root/cartReset': >>>>> No such file or directory >>>>> make[2]: *** [my] Error 1 >>>>> make[2]: Leaving directory `/usr/local/kent/src/hg/****cartReset' >>>>> >>>>> make[1]: *** [cartReset.bins] Error 2 >>>>> make[1]: Leaving directory `/usr/local/kent/src/hg' >>>>> make: *** [cgi] Error 2 >>>>> >>>>> As the error says I don't have an apache folder under my /usr/local >>>>> folder. >>>>> >>>>> Thanks again. >>>>> >>>>> Diego >>>>> >>>>> >>> >> > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
