Cool! Thank you very much Hiram! Diego El 1 de diciembre de 2011 19:26, Hiram Clawson <[email protected]>escribió:
> You need to look where there is actual data. You can find locations for > data > by looking at the tracks in the genome browser. Or asking for a larger > interval: > > $ bigWigToWig -chrom=chr1 -start=1000 -end=10010 > http://hgdownload.cse.ucsc.**edu/gbdb/hg19/bbi/**wgEncodeBuOrchidV1.bigWig<http://hgdownload.cse.ucsc.edu/gbdb/hg19/bbi/wgEncodeBuOrchidV1.bigWig>stdout > variableStep chrom=chr1 span=1 > 10004 0.4125 > 10005 -0.18625 > 10006 0.11225 > 10007 0.26725 > 10008 -0.06475 > 10009 0.11 > 10010 0.4125 > > $ bigWigToBedGraph -chrom=chr1 -start=1000 -end=10010 > http://hgdownload.cse.ucsc.**edu/gbdb/hg19/bbi/**wgEncodeBuOrchidV1.bigWig<http://hgdownload.cse.ucsc.edu/gbdb/hg19/bbi/wgEncodeBuOrchidV1.bigWig>stdout > chr1 10003 10004 0.4125 > chr1 10004 10005 -0.18625 > chr1 10005 10006 0.11225 > chr1 10006 10007 0.26725 > chr1 10007 10008 -0.06475 > chr1 10008 10009 0.11 > chr1 10009 10010 0.4125 > > $ bigWigInfo -chroms http://hgdownload.cse.ucsc.**edu/gbdb/hg19/bbi/** > wgEncodeBuOrchidV1.bigWig<http://hgdownload.cse.ucsc.edu/gbdb/hg19/bbi/wgEncodeBuOrchidV1.bigWig> > version: 4 > isCompressed: yes > isSwapped: 0 > primaryDataSize: 14,289,996,669 > primaryIndexSize: 89,736,320 > zoomLevels: 10 > chromCount: 24 > chr1 0 249250621 > chr10 1 135534747 > chr11 2 135006516 > chr12 3 133851895 > chr13 4 115169878 > chr14 5 107349540 > chr15 6 102531392 > chr16 7 90354753 > chr17 8 81195210 > chr18 9 78077248 > chr19 10 59128983 > chr2 11 243199373 > chr20 12 63025520 > chr21 13 48129895 > chr22 14 51304566 > chr3 15 198022430 > chr4 16 191154276 > chr5 17 180915260 > chr6 18 171115067 > chr7 19 159138663 > chr8 20 146364022 > chr9 21 141213431 > chrX 22 155270560 > chrY 23 59373566 > basesCovered: 2,861,325,143 > mean: 0.265295 > min: -0.790750 > max: 1.644750 > std: 0.480838 > > $ bigWigSummary http://hgdownload.cse.ucsc.**edu/gbdb/hg19/bbi/** > wgEncodeBuOrchidV1.bigWig<http://hgdownload.cse.ucsc.edu/gbdb/hg19/bbi/wgEncodeBuOrchidV1.bigWig>chr1 > 1000 10010 1 > 0.384723 > > > Diego Pereira wrote: > >> Good afternoon Hiram, >> >> I tried the following and some variations but I couldn't make it work. >> >> bigWigToWig >> http://hgdownload.cse.ucsc.**edu/gbdb/hg19/bbi/** >> wgEncodeBuOrchidV1.bigWig-**chrom=chr1<http://hgdownload.cse.ucsc.edu/gbdb/hg19/bbi/wgEncodeBuOrchidV1.bigWig-chrom=chr1> >> -start=1000 -end=1010 >> >> May I ask you to write it down correctly? >> >> Many thanks, >> > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
