Good Morning Fahim: Please note, the genome annotations on A. gambaie at the UCSC genome browser are from the year 2003. You may prefer to use up-to-date annotations at the Ensembl Genomes site:
ftp://ftp.ensemblgenomes.org/pub/metazoa/release-11/gtf/anopheles_gambiae/ And their genome browser: http://metazoa.ensembl.org/index.html --Hiram > On 12/7/11 1:06 PM, Fahim Mohammad wrote: >> Thanks for reply. >> I am interested in finding the annotation of gene symbol on the Anopheles >> Gambaie Genome. Is there a table or annotation file from which I can >> somehow know the start and end position of a gene on this genome. >> There is a table named 'geneName.txt.gz' on >> http://hgdownload.cse.ucsc.edu/goldenPath/anoGam1/database/ and the entries >> are as follows >> >> 0 n/a 2299 >> 1 thrB 10010 >> 2 argA 8888 >> 3 sam-pr 151442 >> 4 hacA 9034 >> 5 nifH 9589 >> 6 azr 2487 >> 7 LipL32 113812 >> >> The first column is ID, second is the geneSymbol and third is CRC. For >> other organisms there are Refseq files and from there I can get the >> coordinate information for gene symbols. But AnoGam1 does not have that >> file. >> >> Is there any other way to find BED files for these gene symbols or at least >> the start and end location of these genes. >> Thanks >> Fahim _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
