Hello Peng, You can find help documentation on the MAF format here:
http://genome.ucsc.edu/FAQ/FAQformat.html#format5 Note that for any of the file formats you can simply click on the format name in the main custom track menu here for more information: http://genome.ucsc.edu/cgi-bin/hgCustom Best regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu On 12/21/11 3:20 PM, Peng Yu wrote: > Hi Vanessa, > > Is there a document describe how to read the display? Some it is > obvious. But some of the display is not obvious. For example, what > does '=' mean? What does the number on the "Gaps" line mean? > > On Wed, Dec 21, 2011 at 12:10 PM, Vanessa Kirkup Swing > <[email protected]> wrote: >> Hi Peng, >> >> You can use the custom track tool to visualize MAFs. To get to the >> custom track tool, click on "Genomes" from the blue navigation bar, >> and then click on "add custom tracks". There is help documentation on >> that page to help you get started. >> >> If you have further questions, please email the list: [email protected] >> >> Vanessa Kirkup Swing >> UCSC Genome Browser Group >> >> >> ---------- Forwarded message ---------- >> From: Peng Yu<[email protected]> >> Date: Tue, Dec 20, 2011 at 3:59 PM >> Subject: [Genome] What software can be used to visualize MAF files? >> To: [email protected] >> >> >> Hi, >> >> I don't see any of the multiple alignment viewer support MAF format. >> This looks wired to me. Does anybody know what tool can be used to >> visualize MAF files? >> >> http://en.wikipedia.org/wiki/List_of_alignment_visualization_software >> >> -- >> Regards, >> Peng >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
