Hi Pauline,

> You can find help documentation on the MAF format here:
>
> http://genome.ucsc.edu/FAQ/FAQformat.html#format5
>
> Note that for any of the file formats you can simply click on the format
> name in the main custom track menu here for more information:
>
> http://genome.ucsc.edu/cgi-bin/hgCustom

None of these answer my questions

1. what does '=' mean?
2. What does the number on the "Gaps" line mean?

-- 
Regards,
Peng
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