Hello John, The table you want is knownGene. If you want to see a description of the contents of any of the tables you can select them from the Table Browser (http://genome.ucsc.edu/cgi-bin/hgTables) by selecting:
group: Genes and Gene Prediction Tracks track: UCSC Genes table: knownGene and click on the "describe table schema" button to see a description of the various fields. of course as you know this table is also available by bulk download here http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/ by clicking on either of these links depending on which format you prefer: knownGene.sql <http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/knownGene.sql> knownGene.txt.gz <http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/knownGene.txt.gz> Best regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu On 12/21/11 12:07 PM, Penn, John wrote: > I'm trying to determine which table from the ftp site contains the > information on where coding regions for genes in the knownGene table start > and stop. > > Thanks, > > John Penn > [email protected] > > > CONFIDENTIALITY NOTICE: This e-mail message, including any attachments, is > for the sole use of the intended recipient(s) and may contain confidential > and privileged information protected by law. Any unauthorized review, use, > disclosure or distribution is prohibited. If you are not the intended > recipient, please contact the sender by reply e-mail and destroy all copies > of the original message. > > _______________________________________________ > Genome maillist [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
