Hi Yishay, I'm sorry, but I'm not sure I completely understand your question. This previous reply we sent to you may help: https://lists.soe.ucsc.edu/pipermail/genome/2011-October/027320.html. Also note, the RefSeqAli table gives the alignment information between a RefSeq and the genome, please see this previous answer for a more detailed explanation: https://lists.soe.ucsc.edu/pipermail/genome/2005-April/007220.html.
Please contact us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 1/25/2012 11:17 PM, Yishay Pinto wrote: > Hello, > I made an algorithm which translates data from refseq and location, to > genomic coordinate, using the mouse refseq data I've downloaded from table > browser. > for example NM_145525 3497 is translated to chr2 76434160. > there is a problem when reseq is not starts in 0 location, for example > NM_138302 starts in 8 (image attached) , but i didn't find the way that I > can see in which location any refseg begins, (other than checking one by > one in genome browser). > link: > http://genome.ucsc.edu/cgi-bin/hgc?hgsid=239531637&o=89202361&t=89207468&g=refGene&i=NM_138302. > > Is there any way to acchive this data? > thanks! > have a nice day. > Yishay > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
