Hi Dario, We recommend that you contact JGI (http://www.jgi.doe.gov/) since they are the ones that built the assembly. Mitochondrial sequences are typically not included in an assembly's scaffolds and are usually done in separate sequencing projects.
If you have further questions, please contact the mailing list: [email protected]. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ---------- Forwarded message ---------- From: dario leonardo balacco <[email protected]> Date: Fri, Feb 3, 2012 at 2:26 AM Subject: [Genome] Info about CionaIntestinalis2 assembly To: [email protected] To whom it may concern, I have downloaded Ciona Intestinalis 2 assembly from "Download Page" to make some genome analysis. The genome downloaded is composed by 4390 scaffolds. I would like to know if Mt sequences are typically not included in an assembly's scaffolds. They are almost always separate sequencing projects. genome is included in one of these scaffolds. Thank you D.L.Balacco _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
