Dear all,
I'm setting up a track hubs for ChIP data on mm9.
It seems to me that the overlay menu (options transparent, none, etc) that used
to appear the configuration page when defining a 'container multiWig' set of
track recently disappeared. Could anyone help me with this as I found this
feature most useful.
Also I can't figure out why some of my 'multiWig containers' now appear split
while others are overlaid.
Thanks for any help,
Felix Naef
ps: this is how i do it
track Histones-3T3
container multiWig
shortLabel Histone 3T3
longLabel Histone ChIP 3T3L1 (Mikkelsen)
type bigWig
visibility full
maxHeightPixels 70:70:32
configurable on
autoScale on
aggregate transparentOverlay
showSubtrackColorOnUi on
priority 1.0
track H3K4me3-Mksen
parent Histones-3T3
shortLabel H3K4me3 (3T3L1)
longLabel H3K4me3 ChIP Mikkelsen (3T3L1)
type bigWig
bigDataUrl http://www.vital-it.ch/prd/jcajan/3T3L1_H3K4me3.density.bw
autoScale on
color 102,204,153
track H3K4me1-Mksen
parent Histones-3T3
shortLabel H3K4me1 (3T3L1)
longLabel H3K4me1 ChIP Mikkelsen (3T3L1)
type bigWig
bigDataUrl http://www.vital-it.ch/prd/jcajan/3T3L1_H3K4me1.density.bw
color 217,217,140
autoScale on
track H3K27ac-Mksen
parent Histones-3T3
shortLabel H3K27ac (3T3L1)
longLabel H3K27ac ChIP Mikkelsen (3T3L1)
type bigWig
bigDataUrl http://www.vital-it.ch/prd/jcajan/3T3L1_H3K27ac.density.bw
color 210,121,121
autoScale on
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