Dear Greg Roe, Thank you for your reply.
I first go to genome browser (http://genome.ucsc.edu/cgi-bin/hgTracks?org=Human&db=hg19&hgsid=243419487&hgTracksConfigPage=notSet&hgt_tSearch=0) and turn on Affy U133Plus2. Then I go to Table Browser, where I can find Affymetrix HG-U133_Plus_2 Probe and Affymetrix HG-U133_Plus_2 Consensus/Exemplar track. Name Description Type Doc Items Affymetrix HG-U133_Plus_2 Consensus/Exemplar Affymetrix HG-U133_Plus_2 Consensus/Exemplar bed 61416 Affymetrix HG-U133_Plus_2 Probe Affymetrix HG-U133_Plus_2 Probe bed 589742 Also it has this error: Track ct_AffymetrixHGU133Plus2Probe_4374 has group Affymetrix GeneChip Array, which isn't in grp table Track ct_AffymetrixHGU133Plus2ConsensusExemplar_9604 has group Affymetrix GeneChip Array, which isn't in grp table Content-Type:text/html I do not give any custom track name. Thank you On Wed, Feb 15, 2012 at 7:52 AM, Greg Roe <[email protected]> wrote: > One quick correction to my reply. Allowable values of group are the 'names' > associated with the group labels, not the labels themselves. E.g.: > > +------------+------------------------------------+ > | name | label | > +------------+------------------------------------+ > | user | Custom Tracks | > | map | Mapping and Sequencing Tracks | > | genes | Genes and Gene Prediction Tracks | > | rna | mRNA and EST Tracks | > | regulation | Regulation | > | compGeno | Comparative Genomics | > | varRep | Variation and Repeats | > | x | Experimental Tracks | > | phenDis | Phenotype and Disease Associations | > | remc | Reference Epigenome Mapping Center | > | expression | Expression | > | neandertal | Neandertal Assembly and Analysis | > +------------+------------------------------------+ > > > > - Greg > > > > On 2/14/12 2:59 PM, Greg Roe wrote: >> >> Hi Fabrice, >> >> You're getting this error because you are giving your custom track an >> undefined group name. Your best bet is probably just to remove the >> "group" setting from your custom track. It will then appear in the top >> Custom Tracks group in the browser. >> >> The group setting will only accept the names of one of the pre-defined >> group names in the browser: Mapping and Sequencing Tracks, Phenotype and >> Disease Associations, etc. >> >> Please let us know if you have any additional questions: >> [email protected] >> >> - >> Greg Roe >> UCSC Genome Bioinformatics Group * >> >> >> * >> >> On 2/14/12 1:42 PM, Greg Roe wrote: >>> >>> Hi Fabrice, >>> I think I found it. Are you seeing this in the Table Browser? >>> >>> - Greg >>> >>> On 2/14/12 12:18 PM, Greg Roe wrote: >>>> >>>> Fabrice, >>>> Can you send us the steps you're doing to get this error? We're unable >>>> to reproduce it. >>>> >>>> Please reply to: [email protected] >>>> >>>> - >>>> Greg Roe >>>> UCSC Genome Bioinformatics Group >>>> >>>> >>>> On 2/13/12 12:56 AM, Fabrice Tourre wrote: >>>>> >>>>> Dear list, >>>>> >>>>> I want to access AffymetrixHGU133Plus2Probe track, but it raise a >>>>> error: >>>>> >>>>> Track ct_AffymetrixHGU133Plus2Probe_4374 has group Affymetrix GeneChip >>>>> Array, which isn't in grp table >>>>> Track ct_AffymetrixHGU133Plus2ConsensusExemplar_9604 has group >>>>> Affymetrix GeneChip Array, which isn't in grp table >>>>> Content-Type:text/html >>>>> _______________________________________________ >>>>> Genome maillist - [email protected] >>>>> https://lists.soe.ucsc.edu/mailman/listinfo/genome >>>> >>>> _______________________________________________ >>>> Genome maillist - [email protected] >>>> https://lists.soe.ucsc.edu/mailman/listinfo/genome >>> >>> _______________________________________________ >>> Genome maillist - [email protected] >>> https://lists.soe.ucsc.edu/mailman/listinfo/genome >> >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
