Hi Fabrice, Did you get that session and/or custom track from someone else? The custom track is not configured correctly and the file that it's pointing to (http://media.affymetrix.com/analysis/downloads/expression_array_bed_files/HG-U133_Plus_2.hg19.bed.gz) is rather old.
You might try contacting Affymetrix for a newer file and creating your own custom track without the incorrect "group" setting. See: http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html#CustomTracks If you have any additional questions, please reply to: [email protected] - Greg Roe UCSC Genome Bioinformatics Group On 2/14/12 7:22 PM, Fabrice Tourre wrote: > Dear Greg Roe, > > Thank you for your reply. > > I first go to genome browser > (http://genome.ucsc.edu/cgi-bin/hgTracks?org=Human&db=hg19&hgsid=243419487&hgTracksConfigPage=notSet&hgt_tSearch=0) > and turn on Affy U133Plus2. Then I go to Table Browser, where I can > find Affymetrix HG-U133_Plus_2 Probe and Affymetrix HG-U133_Plus_2 > Consensus/Exemplar track. > > Name Description Type Doc Items > Affymetrix HG-U133_Plus_2 Consensus/Exemplar Affymetrix HG-U133_Plus_2 > Consensus/Exemplar bed 61416 > Affymetrix HG-U133_Plus_2 Probe Affymetrix HG-U133_Plus_2 Probe bed > 589742 > > Also it has this error: > > Track ct_AffymetrixHGU133Plus2Probe_4374 has group Affymetrix GeneChip > Array, which isn't in grp table > Track ct_AffymetrixHGU133Plus2ConsensusExemplar_9604 has group > Affymetrix GeneChip Array, which isn't in grp table > Content-Type:text/html > > I do not give any custom track name. > > Thank you > > > On Wed, Feb 15, 2012 at 7:52 AM, Greg Roe<[email protected]> wrote: >> One quick correction to my reply. Allowable values of group are the 'names' >> associated with the group labels, not the labels themselves. E.g.: >> >> +------------+------------------------------------+ >> | name | label | >> +------------+------------------------------------+ >> | user | Custom Tracks | >> | map | Mapping and Sequencing Tracks | >> | genes | Genes and Gene Prediction Tracks | >> | rna | mRNA and EST Tracks | >> | regulation | Regulation | >> | compGeno | Comparative Genomics | >> | varRep | Variation and Repeats | >> | x | Experimental Tracks | >> | phenDis | Phenotype and Disease Associations | >> | remc | Reference Epigenome Mapping Center | >> | expression | Expression | >> | neandertal | Neandertal Assembly and Analysis | >> +------------+------------------------------------+ >> >> >> >> - Greg >> >> >> >> On 2/14/12 2:59 PM, Greg Roe wrote: >>> Hi Fabrice, >>> >>> You're getting this error because you are giving your custom track an >>> undefined group name. Your best bet is probably just to remove the >>> "group" setting from your custom track. It will then appear in the top >>> Custom Tracks group in the browser. >>> >>> The group setting will only accept the names of one of the pre-defined >>> group names in the browser: Mapping and Sequencing Tracks, Phenotype and >>> Disease Associations, etc. >>> >>> Please let us know if you have any additional questions: >>> [email protected] >>> >>> - >>> Greg Roe >>> UCSC Genome Bioinformatics Group * >>> >>> >>> * >>> >>> On 2/14/12 1:42 PM, Greg Roe wrote: >>>> Hi Fabrice, >>>> I think I found it. Are you seeing this in the Table Browser? >>>> >>>> - Greg >>>> >>>> On 2/14/12 12:18 PM, Greg Roe wrote: >>>>> Fabrice, >>>>> Can you send us the steps you're doing to get this error? We're unable >>>>> to reproduce it. >>>>> >>>>> Please reply to: [email protected] >>>>> >>>>> - >>>>> Greg Roe >>>>> UCSC Genome Bioinformatics Group >>>>> >>>>> >>>>> On 2/13/12 12:56 AM, Fabrice Tourre wrote: >>>>>> Dear list, >>>>>> >>>>>> I want to access AffymetrixHGU133Plus2Probe track, but it raise a >>>>>> error: >>>>>> >>>>>> Track ct_AffymetrixHGU133Plus2Probe_4374 has group Affymetrix GeneChip >>>>>> Array, which isn't in grp table >>>>>> Track ct_AffymetrixHGU133Plus2ConsensusExemplar_9604 has group >>>>>> Affymetrix GeneChip Array, which isn't in grp table >>>>>> Content-Type:text/html >>>>>> _______________________________________________ >>>>>> Genome maillist - [email protected] >>>>>> https://lists.soe.ucsc.edu/mailman/listinfo/genome >>>>> _______________________________________________ >>>>> Genome maillist - [email protected] >>>>> https://lists.soe.ucsc.edu/mailman/listinfo/genome >>>> _______________________________________________ >>>> Genome maillist - [email protected] >>>> https://lists.soe.ucsc.edu/mailman/listinfo/genome >>> _______________________________________________ >>> Genome maillist - [email protected] >>> https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
