Hi Haojam, Yes, the knownAlt.txt file will provide genomic coordinates for alternative splicing. Please see the Alt Events track description page for more details: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg18&g=knownAlt. This previously answered question may also be of interest to you: https://lists.soe.ucsc.edu/pipermail/genome/2007-June/013761.html
Please contact us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group On 3/7/2012 7:16 PM, 하오잠 로 wrote: > UCSC Group > > Hi, > I would like to retrieve alternative polyadenylation and splicing genomic > coordinates stating chromosome positions from UCSC genome browser for hg18 > reference file. I have located transMapAlnSplicedEst.txt and knownAlt.txt at > the UCSC ftp site. Is these files mean for alternative polyadenylation and > splicing respectively. I would be glad and highly appreciate for your > kindness. > > Regards, > Haojam Rocky > > ===================================== > Seoul National University Biomedical Informatics (SNUBI), > Div. of Biomedical Informatics, > Seoul National University College of Medicine > Ph.D. Candidate, Haojam Rocky > Phone) +82-2-740-8319 > ===================================== > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
