Dear all, I am looking for the source code (or a binary) of the fasta-subseq program that is used in blastz-run-ucsc to abridge repeat regions. This previous message on the mailing list:
https://lists.soe.ucsc.edu/pipermail/genome/2006-June/010902.html says that this program was compiled from PSU source code. However, I couldn't find this program or its source code there. Does anybody know where to find this program? If not, is its usage described somewhere in detail? In particular I am wondering if fasta-subseq uses 1-based coordinates or 0-based coordinates, and if it modifies the header lines in the Fasta file in some way. Thanks, Michiel de Hoon RIKEN Omics Science Center _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
