Hi Dan, txStart = "Transcription start position" txEnd = "Transcription end position" cdsStart = "Coding region start" cdsEnd = "Coding region end"
The UTRs will be the areas between txStart and cdsStart, and cdsEnd and txEnd. If you have any additional questions, please reply to: [email protected] - Greg Roe UCSC Genome Bioinformatics Group On 3/16/12 8:08 PM, Dan Morton wrote: > Hello, > > I was hoping you could give me a little more information on how 3' and 5' > utr is calculated. > > I have been able to figure it out when using a selected gene from > knownGenes table. > > I was given this information from a previous question: > "When you choose to get UTR regions, the coordinates are calculated from > the values in the txStart, txEnd, cdsStart, cdsEnd and strand columns of > the gene table." > > > Thanks, > Dan > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
