Hi Meharji, The difference with table browser output is that if you have the output set to "data points" it is in wiggle format. Here is information on the wiggle format:
http://genome.ucsc.edu/goldenPath/help/wiggle.html To get the same wiggle output as the table browser using the phastCons4way.txt file from http://hgdownload.cse.ucsc.edu/goldenPath/canFam2/database/ you would need to use a utility called hgWiggle. Here is information on that utility: http://genomewiki.ucsc.edu/index.php/Using_hgWiggle_without_a_database I hope that clarifies things for you. If you have further questions, please email the list: [email protected]. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ---------- Forwarded message ---------- From: meharji arumilli <[email protected]> Date: Tue, Apr 3, 2012 at 5:22 AM Subject: Re: [Genome] Conservation scores To: [email protected] Hi, Could you please give a clear idea of the difference in conservation scores between conservation tables downloaded from http://genome.ucsc.edu/cgi-bin/hgTables and phastCons4way.txt from http://hgdownload.cse.ucsc.edu/goldenPath/canFam2/database/. Looking forward to hear from you. -- Best Regards Meharji Arumilli _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
