Hello, Scott. One of our engineers believes that your BED file may be too large. We have seen problems similar to what you're describing when users attempt to upload extremely large files. You mentioned that you are not having any problems with other similar tracks. Is there a significant size difference between this track and those tracks? If your track is too large, it would be better to use the bigBed format instead. If you're not familiar with the bigBed format, please see the following page: http://genome.ucsc.edu/goldenPath/help/bigBed.html.
Please contact us again at [email protected] if you have any further questions. --- Steve Heitner UCSC Genome Bioinformatics Group -----Original Message----- From: [email protected] [mailto:[email protected]] On Behalf Of Scott J.Diede Sent: Tuesday, April 03, 2012 8:24 PM To: [email protected] Subject: [Genome] Custom track uploading error Hello, I am trying to upload a custom .bed file that is .gz compressed and I consistently get the same error. It is: Warning/Error(s): Can't start query: select genome from dbDb where name = 'hg18' mySQL error 2013: Lost connection to MySQL server during query I have 23 other tracks that are very similar, and none of them give this error when I attempt to upload them. I was wondering if this error gives a hint as to what is wrong with my file. Thanks for any guidance you can give me. Best regards, Scott Scott J. Diede, MD, PhD St. Baldrick's Foundation Scholar Fred Hutchinson Cancer Research Center 1100 Fairview Ave N. Mailstop c3-168 Seattle, WA 98109 _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
